Volume Mip mode#

View a volume using MIP (Maximum Intensity Projection) rendering.

image volume mip
Imageio: 'stent.npz' was not found on your computer; downloading it now.
Try 1. Download from https://github.com/imageio/imageio-binaries/raw/master/images/stent.npz (805 kB)
Downloading: 8192/824612 bytes (1.0%)824612/824612 bytes (100.0%)
  Done
File saved as /home/runner/.imageio/images/stent.npz.
/opt/hostedtoolcache/Python/3.12.11/x64/lib/python3.12/site-packages/pygfx/objects/_ruler.py:400: RuntimeWarning: divide by zero encountered in divide
  screen_full = (ndc_full[:, :2] / ndc_full[:, 3:4]) * half_canvas_size
/opt/hostedtoolcache/Python/3.12.11/x64/lib/python3.12/site-packages/pygfx/objects/_ruler.py:400: RuntimeWarning: invalid value encountered in divide
  screen_full = (ndc_full[:, :2] / ndc_full[:, 3:4]) * half_canvas_size
/opt/hostedtoolcache/Python/3.12.11/x64/lib/python3.12/site-packages/pygfx/objects/_ruler.py:412: RuntimeWarning: invalid value encountered in divide
  screen_sel = (ndc_sel[:, :2] / ndc_sel[:, 3:4]) * half_canvas_size

# test_example = true

import numpy as np
import fastplotlib as fpl
import imageio.v3 as iio

voldata = iio.imread("imageio:stent.npz").astype(np.float32)

figure = fpl.Figure(cameras="3d", controller_types="orbit", size=(700, 560))

figure[0, 0].add_image_volume(voldata, mode="mip", alpha_mode="add")

figure.show()


# load a pre-saved camera state
state = {
    "position": np.array([-120, 90, 330]),
    "rotation": np.array([-0.07280538, -0.41100206, -0.03295049, 0.90812496]),
    "scale": np.array([1.0, 1.0, 1.0]),
    "reference_up": np.array([0.0, 1.0, 0.0]),
    "fov": 50.0,
    "width": 128.0,
    "height": 128.0,
    "depth": 313,
    "zoom": 0.75,
    "maintain_aspect": True,
    "depth_range": None,
}


figure[0, 0].camera.set_state(state)


# NOTE: fpl.loop.run() should not be used for interactive sessions
# See the "JupyterLab and IPython" section in the user guide
if __name__ == "__main__":
    print(__doc__)
    fpl.loop.run()

Total running time of the script: (0 minutes 1.237 seconds)

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